Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs58970461 | chr2:37123137 | A/G | 4.74E-6 | 368 | 20.5 | 12.85 | 8.73 | KM Plot |
| LIHC | rs59187119 | chr11:73530703 | A/T | 3.23E-6 | 368 | 19.5 | 20.95 | 1.87 | KM Plot |
| LIHC | rs59252241 | chr15:91751533 | G/A | 1.84E-5 | 367 | 20.5 | 14.6 | 9.87 | KM Plot |
| LIHC | rs59263572 | chr14:73536928 | T/G | 5.05E-6 | 361 | 20.5 | 13.23 | 4.93 | KM Plot |
| LIHC | rs59854977 | chr2:37182342 | C/T | 9.31E-6 | 367 | 20.45 | 12.17 | 8.73 | KM Plot |
| LIHC | rs60022493 | chr2:37260312 | G/A | 2.27E-5 | 366 | 20.4 | 15.25 | 8.73 | KM Plot |
| LIHC | rs60238894 | chr15:44938542 | T/C | 5.72E-6 | 365 | 20.9 | 18.12 | 9.3 | KM Plot |
| LIHC | rs60280069 | chr11:73553707 | G/A | 3.31E-6 | 368 | 19.5 | 20.48 | 1.87 | KM Plot |
| LIHC | rs60433759 | chr11:96724222 | A/G | 1.55E-5 | 365 | 20.17 | 18.4 | 2.63 | KM Plot |
| LIHC | rs60582399 | chr5:26057091 | A/T | 1.69E-5 | 364 | 19.3 | 21.1 | 1.03 | KM Plot |
| LIHC | rs60913189 | chr5:147045886 | A/G | 4.13E-7 | 366 | 20.05 | 16.2 | 4.67 | KM Plot |
| LIHC | rs61897956 | chr11:119958757 | G/A | 7.78E-12 | 365 | 19.57 | 20.07 | 0.9 | KM Plot |
| LIHC | rs61900463 | chr11:119974582 | C/G | 1.02E-11 | 365 | 19.5 | 20.4 | 0.9 | KM Plot |
| LIHC | rs62162660 | chr2:49661836 | A/G | 9.93E-11 | 360 | 19.5 | 20.13 | 1.13 | KM Plot |
| LIHC | rs62162670 | chr2:49664699 | C/T | 0 | 361 | 19.17 | 20.7 | 0.75 | KM Plot |